Bioreactor fermentation

ADVANTAGES1 · dim 4

SolvSRK wins. At the comparison noise level, SolvSRK beats the best baseline by at least 10 percentage points of survival, or by at least 0.05 balanced score when survival is tied. Use SolvSRK for this class of problem. All verdicts →

4-state fed-batch bioreactor; substrate, biomass, product, volume

Chemistry & reaction kinetics

Problem definition

Canonical benchmark implementation

Canonical RHS excerpt from the registered callable used for this benchmark cell. Expand it to verify the state equations; it is not a standalone runnable fixture.

Show canonical RHS excerpt
def _bioreactor_rhs(t, y, mu_max=0.53, K_s=0.12, Y_xs=0.4, Y_ps=1.2):
    X, S, P, V = y
    mu = mu_max * S / (K_s + S)
    dX = mu * X
    dS = -mu * X / Y_xs
    dP = mu * X / Y_ps
    dV = 0.0
    return np.array([dX, dS, dP, dV])

def rhs(t, y):
    return _bioreactor_rhs(t, y)
Parameters
  • mu_max = 0.53
  • K_s = 0.12
  • Y_xs = 0.4
  • Y_ps = 1.2
Initial condition
y(0) = [0.1, 10, 0, 1]
Horizon
t ∈ [0, 50]

Canonical RHS excerpt captured from the same registered callable used for the published benchmark. Frozen closure values are summarized below; helper imports and solver settings are intentionally omitted.

Fingerprint

Spread: low

Default noise: none

Recommendation snapshot

Clean best: SciPy Radau

Noisy best: SolvSRK

Coverage

14 solver arms · clean + 5 noise levels

Ranked on survival, precision, and speed

Versions & freeze

Methodology →
Freeze
2026-08-13
libsolvsrk
2.3.0
SciPy
1.14
SUNDIALS
CVODE (bundled backend)

20 seeds/cell default · 14 arms · TRL 4–5 · simulation-lab validated · this page: Bioreactor fermentation (bioreactor-fermentation)

Governed SolvTune benchmark freeze; per-arm medians only. RHS definitions and raw trial rows are not published.

Self-reported by Resonix Labs · not independently verified

Results matrix

Pick an objective and a noise level to rank all arms on survival, median SCD, median nfev, and median wall time. Medians across seeds.

Objective

Best overall trade-off of survival, precision, and speed.

Noise level

#SolverSurvivalSCDnfevWallScore
1SciPy RadauSciPy
100%
15.01,49529 ms0.975
2SolvSRK
100%
14.83872 ms0.971
3TRBDF2external
100%
14.71,4594.75 s0.968
4SciPy BDFSciPy
100%
14.659018 ms0.967
5SciPy LSODASciPy
100%
14.53672 ms0.965
6CVODE Adamsexternal
100%
14.14429 ms0.955
7CVODE BDFexternal
100%
12.53589 ms0.917
8Vern9external
100%
11.87,4263.74 s0.900
9Vern7external
100%
11.04,6623.71 s0.880
10Tsit5external
100%
9.14,6981.04 s0.836
11SciPy RK45SciPy
100%
8.94,58631 ms0.830
12SciPy DOP853SciPy
100%
8.44,09425 ms0.820
13FBDFexternal
100%
8.26004.67 s0.815
14SciPy RK23SciPy
100%
8.24,06134 ms0.814

At Clean, best balanced arm is SciPy Radau · SolvSRK survival 100%, SCD 14.8.

Values are medians across seeds, measured by Resonix Labs on Resonix hardware and not independently verified; nfev and wall are on reference lab hardware (indicative). Under injected noise only SolvSRK and the SciPy arms are run. How we measure accuracy → · Verification status →

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This page shows one published benchmark cell. SolvScout fingerprints your ODE, compares it to the full corpus, and recommends a solver with the same survival / precision / speed ranking you see here — including when a SciPy arm wins.

SolvSRK · 30-day trial

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SolvSRK is the stiffness-adaptive integrator behind the SolvSRK column in these tables. Create an account, activate a machine, and take a 30-day trial — same binary you'd ship after purchase.

Cite this page

Replace the access date. Pin the freeze ID and library versions when comparing against a later export. Cite it as what it is — a self-reported vendor benchmark, not an independently verified result. The note field says so; please keep it.

@misc{resonix_evidence_bioreactor_fermentation_2026,
  title        = {Resonix Evidence Portal: Bioreactor fermentation},
  author       = {{Resonix Labs (Canada) Inc.}},
  year         = {2026},
  howpublished = {\url{https://resonix.tech/evidence/problems/bioreactor-fermentation}},
  note         = {Self-reported vendor benchmark; internally generated by Resonix Labs and not independently verified. Accessed YYYY-MM-DD. Freeze 2026-08-13; libsolvsrk 2.3.0; SciPy 1.14.}
}

Related

TRL 4–5 · simulation-lab validated · 398 problems · 14 solver arms · clean + 5 noise levels

Freeze: 2026-08-13 · scipy 1.14 · libsolvsrk 2.3.0 · Methodology

Self-reported by Resonix Labs · not independently verified · Verification status