MEDAKZO enzyme reaction

ADVANTAGES2 · dim 2

SolvSRK wins. At the comparison noise level, SolvSRK beats the best baseline by at least 10 percentage points of survival, or by at least 0.05 balanced score when survival is tied. Use SolvSRK for this class of problem. All verdicts →

Enzyme kinetics with S2 stiffness; from DETEST suite

Chemistry & reaction kinetics

Problem definition

Canonical benchmark implementation

Canonical RHS excerpt from the registered callable used for this benchmark cell. Expand it to verify the state equations; it is not a standalone runnable fixture.

Show canonical RHS excerpt
def _medakzo_rhs(t, y):
    y1, y2 = y
    return np.array([
        -0.04 * y1 + 1e4 * y2 * (1 - y1),
        0.04 * y1 - 1e4 * y2 * (1 - y1) - 3e7 * y2**2,
    ])
Parameters
  • No captured parameters; constants are explicit in the RHS excerpt.
Initial condition
y(0) = [1, 0]
Horizon
t ∈ [0, 120]

Canonical RHS excerpt captured from the same registered callable used for the published benchmark. Frozen closure values are summarized below; helper imports and solver settings are intentionally omitted.

Fingerprint

Spread: high

Default noise: none

Recommendation snapshot

Clean best: SolvSRK

Noisy best: SolvSRK

Coverage

14 solver arms · clean + 5 noise levels

Ranked on survival, precision, and speed

Versions & freeze

Methodology →
Freeze
2026-08-13
libsolvsrk
2.3.0
SciPy
1.14
SUNDIALS
CVODE (bundled backend)

20 seeds/cell default · 14 arms · TRL 4–5 · simulation-lab validated · this page: MEDAKZO enzyme reaction (medakzo-enzyme-reaction)

Governed SolvTune benchmark freeze; per-arm medians only. RHS definitions and raw trial rows are not published.

Self-reported by Resonix Labs · not independently verified

Results matrix

Pick an objective and a noise level to rank all arms on survival, median SCD, median nfev, and median wall time. Medians across seeds.

Objective

Best overall trade-off of survival, precision, and speed.

Noise level

#SolverSurvivalSCDnfevWallScore
1SolvSRK
100%
10.21,0745 ms0.862
2SciPy RadauSciPy
100%
9.695612 ms0.847
3SciPy LSODASciPy
100%
7.24152 ms0.790
4SciPy BDFSciPy
100%
6.954910 ms0.783
5CVODE BDFexternal
100%
6.64399 ms0.776
6SciPy DOP853SciPy
100%
6.5808,1664.93 s0.773
7CVODE Adamsexternal
100%
6.44,27337 ms0.772
8SciPy RK23SciPy
100%
5.9514,0674.09 s0.760
9SciPy RK45SciPy
100%
5.9922,3766.45 s0.760
Tsit5external
0%

At Clean, best balanced arm is SolvSRK.

Values are medians across seeds, measured by Resonix Labs on Resonix hardware and not independently verified; nfev and wall are on reference lab hardware (indicative). Under injected noise only SolvSRK and the SciPy arms are run. How we measure accuracy → · Verification status →

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SolvSRK · 30-day trial

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Cite this page

Replace the access date. Pin the freeze ID and library versions when comparing against a later export. Cite it as what it is — a self-reported vendor benchmark, not an independently verified result. The note field says so; please keep it.

@misc{resonix_evidence_medakzo_enzyme_reaction_2026,
  title        = {Resonix Evidence Portal: MEDAKZO enzyme reaction},
  author       = {{Resonix Labs (Canada) Inc.}},
  year         = {2026},
  howpublished = {\url{https://resonix.tech/evidence/problems/medakzo-enzyme-reaction}},
  note         = {Self-reported vendor benchmark; internally generated by Resonix Labs and not independently verified. Accessed YYYY-MM-DD. Freeze 2026-08-13; libsolvsrk 2.3.0; SciPy 1.14.}
}

Related

TRL 4–5 · simulation-lab validated · 398 problems · 14 solver arms · clean + 5 noise levels

Freeze: 2026-08-13 · scipy 1.14 · libsolvsrk 2.3.0 · Methodology

Self-reported by Resonix Labs · not independently verified · Verification status