Bioreactor Haldane + Product Inhibition (dim=3)

ADVANTAGES1 · dim 3

SolvSRK wins. At the comparison noise level, SolvSRK beats the best baseline by at least 10 percentage points of survival, or by at least 0.05 balanced score when survival is tied. Use SolvSRK for this class of problem. All verdicts →

3-state continuous bioreactor with Haldane substrate inhibition and competitive product inhibition. States: substrate, biomass, product. Continuous operation at dilution rate D=0.05/h. Envelope IDs 33, 164 (GERB1-3 v2 phase).

Biomedical & bioprocess

Problem definition

Andrews (1968) Biotechnol Bioeng; Haldane enzyme inhibition kinetics

Canonical RHS excerpt from the registered callable used for this benchmark cell. Expand it to verify the state equations; it is not a standalone runnable fixture.

Show canonical RHS excerpt
def _rhs_haldane_pi(t, y):
    S, X, P = y[0], y[1], y[2]

    S = max(S, 0.0)
    X = max(X, 0.0)

    mu = _MU_MAX * S / (S + _K_S + S * S / _K_I) * _K_P / (P + _K_P)

    dS = _D * (_S_IN - S) - mu * X / _Y_XS
    dX = (mu - _KD - _D) * X
    dP = mu * X * _Y_PS / _Y_XS - _D * P

    return np.array([dS, dX, dP])
Parameters
  • _D = 0.05
  • _KD = 0.01
  • _K_I = 22
  • _K_P = 15
  • _K_S = 1.2
  • _MU_MAX = 0.35
  • _S_IN = 50
  • _Y_PS = 0.4
  • _Y_XS = 0.45
Initial condition
y(0) = [10, 2, 0.5]
Horizon
t ∈ [0, 200]

Canonical RHS excerpt captured from the same registered callable used for the published benchmark. Frozen closure values are summarized below; helper imports and solver settings are intentionally omitted.

Fingerprint

Spread: low

Default noise: low

Recommendation snapshot

Clean best: SolvSRK

Noisy best: SolvSRK

Coverage

14 solver arms · clean + 5 noise levels

Ranked on survival, precision, and speed

Versions & freeze

Methodology →
Freeze
2026-08-13
libsolvsrk
2.3.0
SciPy
1.14
SUNDIALS
CVODE (bundled backend)

20 seeds/cell default · 14 arms · TRL 4–5 · simulation-lab validated · this page: Bioreactor Haldane + Product Inhibition (dim=3) (bioreactor-haldane-product-inhibition-dim-3)

Governed SolvTune benchmark freeze; per-arm medians only. RHS definitions and raw trial rows are not published.

Self-reported by Resonix Labs · not independently verified

Results matrix

Pick an objective and a noise level to rank all arms on survival, median SCD, median nfev, and median wall time. Medians across seeds.

Objective

Best overall trade-off of survival, precision, and speed.

Noise level

#SolverSurvivalSCDnfevWallScore
1SolvSRK
100%
13.51,57311 ms0.941
2Vern9external
100%
12.21,9543.80 s0.910
3Vern7external
100%
12.11,3223.82 s0.906
4SciPy RadauSciPy
100%
10.31,93339 ms0.865
5Tsit5external
100%
9.61,068796 ms0.847
6FBDFexternal
100%
9.56814.88 s0.845
7SciPy DOP853SciPy
100%
9.31,2508 ms0.841
8SciPy RK45SciPy
100%
9.31,1729 ms0.841
9SciPy LSODASciPy
100%
8.89004 ms0.828
10CVODE Adamsexternal
100%
8.640710 ms0.823
11SciPy RK23SciPy
100%
8.42,27321 ms0.819
12CVODE BDFexternal
100%
8.23499 ms0.814
13SciPy BDFSciPy
100%
8.180726 ms0.813
14TRBDF2external
100%
7.13,8664.98 s0.787

At Clean, best balanced arm is SolvSRK.

Values are medians across seeds, measured by Resonix Labs on Resonix hardware and not independently verified; nfev and wall are on reference lab hardware (indicative). Under injected noise only SolvSRK and the SciPy arms are run. How we measure accuracy → · Verification status →

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Cite this page

Replace the access date. Pin the freeze ID and library versions when comparing against a later export. Cite it as what it is — a self-reported vendor benchmark, not an independently verified result. The note field says so; please keep it.

@misc{resonix_evidence_bioreactor_haldane_product_inhibition_dim_3_2026,
  title        = {Resonix Evidence Portal: Bioreactor Haldane + Product Inhibition (dim=3)},
  author       = {{Resonix Labs (Canada) Inc.}},
  year         = {2026},
  howpublished = {\url{https://resonix.tech/evidence/problems/bioreactor-haldane-product-inhibition-dim-3}},
  note         = {Self-reported vendor benchmark; internally generated by Resonix Labs and not independently verified. Accessed YYYY-MM-DD. Freeze 2026-08-13; libsolvsrk 2.3.0; SciPy 1.14.}
}

Related

TRL 4–5 · simulation-lab validated · 398 problems · 14 solver arms · clean + 5 noise levels

Freeze: 2026-08-13 · scipy 1.14 · libsolvsrk 2.3.0 · Methodology

Self-reported by Resonix Labs · not independently verified · Verification status