Peptide Degradation at 60°C (dim=4)

ADVANTAGES0 · dim 4

SolvSRK wins. At the comparison noise level, SolvSRK beats the best baseline by at least 10 percentage points of survival, or by at least 0.05 balanced score when survival is tied. Use SolvSRK for this class of problem. All verdicts →

4-state forced degradation kinetics of therapeutic peptide at elevated temperature. States: intact peptide, deamidated species, oxidized species, aggregates. Arrhenius-driven rates. Mild stiffness from aggregation nonlinearity. Envelope ID 27.

Biomedical & bioprocess

Problem definition

Manning et al. (2010) Pharm Res; Topp (2000) J Pharm Sci

Canonical RHS excerpt from the registered callable used for this benchmark cell. Expand it to verify the state equations; it is not a standalone runnable fixture.

Show canonical RHS excerpt
def _rhs_peptide_deg(t, y):
    P, D, O, A = y[0], y[1], y[2], y[3]

    P = max(P, 0.0)
    D = max(D, 0.0)
    O = max(O, 0.0)
    A = max(A, 0.0)

    r_deam = _K_DEAM * P * _PH_FACTOR
    r_ox = _K_OX * P
    r_agg_p = _K_AGG * P * P
    r_agg_d = _K_DEAM_AGG * (D + O) * (D + O)

    dP = -r_deam - r_ox - r_agg_p
    dD = r_deam - _K_DEAM_AGG * D * (D + O)
    dO = r_ox - _K_DEAM_AGG * O * (D + O)
    dA = r_agg_p + r_agg_d

    return np.array([dP, dD, dO, dA])
Parameters
  • _K_AGG = 5e-05
  • _K_DEAM = 0.0025
  • _K_DEAM_AGG = 0.0001
  • _K_OX = 0.001
  • _PH_FACTOR = 1
Initial condition
y(0) = [10, 0, 0, 0]
Horizon
t ∈ [0, 720]

Canonical RHS excerpt captured from the same registered callable used for the published benchmark. Frozen closure values are summarized below; helper imports and solver settings are intentionally omitted.

Fingerprint

Spread: low

Default noise: low

Recommendation snapshot

Clean best: SolvSRK

Noisy best: SolvSRK

Coverage

14 solver arms · clean + 5 noise levels

Ranked on survival, precision, and speed

Versions & freeze

Methodology →
Freeze
2026-08-13
libsolvsrk
2.3.0
SciPy
1.14
SUNDIALS
CVODE (bundled backend)

20 seeds/cell default · 14 arms · TRL 4–5 · simulation-lab validated · this page: Peptide Degradation at 60°C (dim=4) (peptide-degradation-at-60-c-dim-4)

Governed SolvTune benchmark freeze; per-arm medians only. RHS definitions and raw trial rows are not published.

Self-reported by Resonix Labs · not independently verified

Results matrix

Pick an objective and a noise level to rank all arms on survival, median SCD, median nfev, and median wall time. Medians across seeds.

Objective

Best overall trade-off of survival, precision, and speed.

Noise level

#SolverSurvivalSCDnfevWallScore
1SolvSRK
100%
14.94,35730 ms0.974
2Vern9external
100%
12.82262.54 s0.923
3SciPy RadauSciPy
100%
11.77038 ms0.897
4Vern7external
100%
11.32022.53 s0.889
5SciPy DOP853SciPy
100%
9.7110<1 ms0.850
6CVODE Adamsexternal
100%
9.2654 ms0.839
7Tsit5external
100%
9.1180466 ms0.836
8SciPy RK45SciPy
100%
8.8194<1 ms0.828
9SciPy LSODASciPy
100%
8.7105<1 ms0.827
10FBDFexternal
100%
8.12003.19 s0.812
11SciPy RK23SciPy
100%
7.91,0105 ms0.807
12CVODE BDFexternal
100%
7.31265 ms0.793
13SciPy BDFSciPy
100%
7.22094 ms0.791
14TRBDF2external
100%
6.02,1203.27 s0.762

At Clean, best balanced arm is SolvSRK.

Values are medians across seeds, measured by Resonix Labs on Resonix hardware and not independently verified; nfev and wall are on reference lab hardware (indicative). Under injected noise only SolvSRK and the SciPy arms are run. How we measure accuracy → · Verification status →

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Cite this page

Replace the access date. Pin the freeze ID and library versions when comparing against a later export. Cite it as what it is — a self-reported vendor benchmark, not an independently verified result. The note field says so; please keep it.

@misc{resonix_evidence_peptide_degradation_at_60_c_dim_4_2026,
  title        = {Resonix Evidence Portal: Peptide Degradation at 60°C (dim=4)},
  author       = {{Resonix Labs (Canada) Inc.}},
  year         = {2026},
  howpublished = {\url{https://resonix.tech/evidence/problems/peptide-degradation-at-60-c-dim-4}},
  note         = {Self-reported vendor benchmark; internally generated by Resonix Labs and not independently verified. Accessed YYYY-MM-DD. Freeze 2026-08-13; libsolvsrk 2.3.0; SciPy 1.14.}
}

Related

TRL 4–5 · simulation-lab validated · 398 problems · 14 solver arms · clean + 5 noise levels

Freeze: 2026-08-13 · scipy 1.14 · libsolvsrk 2.3.0 · Methodology

Self-reported by Resonix Labs · not independently verified · Verification status